Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 INTS4P1-203ENST00000641008 3683 ntBASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 IGF1-203ENST00000392904 761 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 RBM8B-201ENST00000555532 525 ntBASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 MIR3147-201ENST00000577811 66 ntBASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC3Q9BQI4 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC013726.1-201ENST00000563747 2285 ntBASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC026316.1-201ENST00000398900 414 ntBASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC103691.2-201ENST00000618824 433 ntBASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC133540.1-201ENST00000620845 1019 ntBASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC3Q9BQI4 AC131212.3-201ENST00000624087 4219 ntBASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 CYP4F23P-201ENST00000593402 1579 ntBASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC3Q9BQI4 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 AC092978.1-202ENST00000637590 1327 ntBASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC3Q9BQI4 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms