Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC23.07■■□□□ 1.28
IFT140Q96RY7 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
IFT140Q96RY7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
IFT140Q96RY7 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
IFT140Q96RY7 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
IFT140Q96RY7 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 DERL2-206ENST00000572834 589 ntTSL 3 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
IFT140Q96RY7 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
IFT140Q96RY7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
IFT140Q96RY7 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
IFT140Q96RY7 AC106785.2-201ENST00000564385 1319 ntBASIC23.06■■□□□ 1.28
IFT140Q96RY7 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC23.06■■□□□ 1.28
IFT140Q96RY7 SFPQP1-201ENST00000446621 1786 ntBASIC23.05■■□□□ 1.28
IFT140Q96RY7 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 AL031768.1-201ENST00000606542 701 ntBASIC23.05■■□□□ 1.28
IFT140Q96RY7 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 AC079331.1-201ENST00000623200 1200 ntBASIC23.05■■□□□ 1.28
IFT140Q96RY7 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 KRT8P25-201ENST00000473150 1456 ntBASIC23.05■■□□□ 1.28
IFT140Q96RY7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 AL590824.1-201ENST00000403828 1349 ntBASIC23.05■■□□□ 1.28
IFT140Q96RY7 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
IFT140Q96RY7 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 SDCBP2P1-201ENST00000416115 614 ntBASIC23.05■■□□□ 1.28
IFT140Q96RY7 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 PPY-202ENST00000587006 431 ntTSL 3 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC23.05■■□□□ 1.28
IFT140Q96RY7 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AC026691.1-201ENST00000602502 2017 ntBASIC23.04■■□□□ 1.28
IFT140Q96RY7 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AC103724.2-201ENST00000520355 476 ntBASIC23.04■■□□□ 1.28
IFT140Q96RY7 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms