Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 AC091812.3-201ENST00000621362 345 ntBASIC17.25■□□□□ 0.35
CTR9Q6PD62 CU633904.3-201ENST00000624042 1029 ntBASIC17.25■□□□□ 0.35
CTR9Q6PD62 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 AC023908.3-201ENST00000564211 3047 ntBASIC17.25■□□□□ 0.35
CTR9Q6PD62 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CTR9Q6PD62 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.25■□□□□ 0.35
CTR9Q6PD62 LINC01165-201ENST00000445190 1623 ntBASIC17.25■□□□□ 0.35
CTR9Q6PD62 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC239868.1-201ENST00000369385 493 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 PDIA3P2-201ENST00000428073 158 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 AL161932.2-201ENST00000435436 679 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC073150.1-201ENST00000450406 1084 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 IMP3P2-201ENST00000489760 475 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC245884.6-201ENST00000515672 1067 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC090857.1-201ENST00000527400 390 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC005586.2-201ENST00000563946 837 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 MEG3_2.1-201ENST00000611456 105 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 MIR6074-201ENST00000612054 107 ntBASIC17.24■□□□□ 0.35
CTR9Q6PD62 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CTR9Q6PD62 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CTR9Q6PD62 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 AC011498.7-201ENST00000624986 2027 ntBASIC17.23■□□□□ 0.35
CTR9Q6PD62 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 LINC00552-201ENST00000625151 2579 ntBASIC17.23■□□□□ 0.35
CTR9Q6PD62 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CTR9Q6PD62 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.23■□□□□ 0.35
CTR9Q6PD62 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms