Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.82□□□□□ -0.04
USP39Q53GS9 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.82□□□□□ -0.04
USP39Q53GS9 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.82□□□□□ -0.04
USP39Q53GS9 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC14.82□□□□□ -0.04
USP39Q53GS9 AP002803.1-201ENST00000528836 498 ntBASIC14.82□□□□□ -0.04
USP39Q53GS9 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC14.82□□□□□ -0.04
USP39Q53GS9 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.82□□□□□ -0.04
USP39Q53GS9 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.82□□□□□ -0.04
USP39Q53GS9 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.82□□□□□ -0.04
USP39Q53GS9 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.82□□□□□ -0.04
USP39Q53GS9 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.82□□□□□ -0.04
USP39Q53GS9 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 FRMPD2B-201ENST00000431305 1347 ntBASIC14.82□□□□□ -0.04
USP39Q53GS9 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.82□□□□□ -0.04
USP39Q53GS9 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.82□□□□□ -0.04
USP39Q53GS9 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.82□□□□□ -0.04
USP39Q53GS9 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
USP39Q53GS9 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.82□□□□□ -0.04
USP39Q53GS9 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.81□□□□□ -0.04
USP39Q53GS9 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
USP39Q53GS9 CICP14-201ENST00000629111 2732 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.81□□□□□ -0.04
USP39Q53GS9 RPL8P2-201ENST00000430538 502 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 ALG3P1-201ENST00000508806 1114 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 LINC01783-202ENST00000614408 828 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 AP001065.2-201ENST00000617205 644 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 BX284668.2-205ENST00000619677 828 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.81□□□□□ -0.04
USP39Q53GS9 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 AC007191.1-201ENST00000623179 2995 ntBASIC14.81□□□□□ -0.04
USP39Q53GS9 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
USP39Q53GS9 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.81□□□□□ -0.04
USP39Q53GS9 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
USP39Q53GS9 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 OR2K2-202ENST00000374428 1038 ntBASIC14.8□□□□□ -0.04
USP39Q53GS9 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
USP39Q53GS9 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC14.8□□□□□ -0.04
USP39Q53GS9 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms