Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AL357563.1-201ENST00000404728 395 ntBASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 MRPL22P1-201ENST00000505398 616 ntBASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 RNF146-211ENST00000609447 607 ntTSL 4 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AC133540.1-201ENST00000620845 1019 ntBASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 AP003400.6-201ENST00000624698 740 ntBASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CTC1Q2NKJ3 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 BCAS2P2-201ENST00000425064 674 ntBASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 AC092638.2-201ENST00000441105 947 ntBASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 MTND4LP12-201ENST00000448237 295 ntBASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 FTH1P22-201ENST00000456305 520 ntBASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 ORAOV1P1-201ENST00000503108 395 ntBASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 POLD4-208ENST00000532830 904 ntTSL 3 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 AP000911.2-201ENST00000534330 502 ntBASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.52■□□□□ 0.08
CTC1Q2NKJ3 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CTC1Q2NKJ3 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 BX640514.1-201ENST00000583223 1918 ntBASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CTC1Q2NKJ3 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms