Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
CDH6P55285 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.17■□□□□ 0.02
CDH6P55285 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 MIR1909-201ENST00000411312 80 ntBASIC15.17■□□□□ 0.02
CDH6P55285 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 AC005586.2-201ENST00000563946 837 ntBASIC15.17■□□□□ 0.02
CDH6P55285 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.17■□□□□ 0.02
CDH6P55285 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 AC008687.7-202ENST00000637404 953 ntBASIC15.17■□□□□ 0.02
CDH6P55285 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.17■□□□□ 0.02
CDH6P55285 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDH6P55285 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.17■□□□□ 0.02
CDH6P55285 E2F3P2-201ENST00000447755 1422 ntBASIC15.17■□□□□ 0.02
CDH6P55285 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.17■□□□□ 0.02
CDH6P55285 AC064801.2-201ENST00000625052 1303 ntBASIC15.17■□□□□ 0.02
CDH6P55285 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CDH6P55285 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CDH6P55285 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CDH6P55285 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
CDH6P55285 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CDH6P55285 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH6P55285 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH6P55285 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.16■□□□□ 0.02
CDH6P55285 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.16■□□□□ 0.02
CDH6P55285 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.16■□□□□ 0.02
CDH6P55285 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH6P55285 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.16■□□□□ 0.02
CDH6P55285 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.16■□□□□ 0.02
CDH6P55285 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CDH6P55285 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CDH6P55285 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDH6P55285 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.15■□□□□ 0.02
CDH6P55285 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.15■□□□□ 0.02
CDH6P55285 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 AC010327.5-201ENST00000586923 3061 ntBASIC15.15■□□□□ 0.02
CDH6P55285 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 ANKRD19P-201ENST00000338192 862 ntBASIC15.15■□□□□ 0.02
CDH6P55285 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CDH6P55285 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.15■□□□□ 0.02
CDH6P55285 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDH6P55285 AL161932.2-201ENST00000435436 679 ntBASIC15.15■□□□□ 0.02
CDH6P55285 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms