Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 AC015688.4-201ENST00000580780 1647 ntBASIC19.7■□□□□ 0.74
MSH6P52701 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC19.7■□□□□ 0.74
MSH6P52701 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 AC126365.1-201ENST00000578585 1514 ntBASIC19.7■□□□□ 0.74
MSH6P52701 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
MSH6P52701 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
MSH6P52701 AC073347.1-201ENST00000421633 2643 ntBASIC19.7■□□□□ 0.74
MSH6P52701 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSH6P52701 MIR611-201ENST00000384869 67 ntBASIC19.7■□□□□ 0.74
MSH6P52701 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MSH6P52701 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 RN7SL351P-201ENST00000469306 248 ntBASIC19.7■□□□□ 0.74
MSH6P52701 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC19.7■□□□□ 0.74
MSH6P52701 AC026412.1-206ENST00000502273 206 ntBASIC19.7■□□□□ 0.74
MSH6P52701 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC19.7■□□□□ 0.74
MSH6P52701 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC19.7■□□□□ 0.74
MSH6P52701 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC19.7■□□□□ 0.74
MSH6P52701 AC026336.4-201ENST00000624565 1050 ntBASIC19.7■□□□□ 0.74
MSH6P52701 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
MSH6P52701 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC19.69■□□□□ 0.74
MSH6P52701 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
MSH6P52701 SSR4-202ENST00000370085 526 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 HNRNPA1P21-201ENST00000424115 961 ntBASIC19.69■□□□□ 0.74
MSH6P52701 AL773545.2-201ENST00000442149 472 ntBASIC19.69■□□□□ 0.74
MSH6P52701 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 CMC2-204ENST00000562713 573 ntTSL 3 BASIC19.69■□□□□ 0.74
MSH6P52701 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC19.69■□□□□ 0.74
MSH6P52701 CMC2-209ENST00000565108 399 ntTSL 2 BASIC19.69■□□□□ 0.74
MSH6P52701 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MSH6P52701 AC126755.5-201ENST00000622756 267 ntBASIC19.69■□□□□ 0.74
MSH6P52701 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MSH6P52701 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSH6P52701 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MSH6P52701 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.68■□□□□ 0.74
MSH6P52701 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MSH6P52701 TMBIM7P-203ENST00000641617 1718 ntBASIC19.68■□□□□ 0.74
MSH6P52701 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MSH6P52701 AC020931.1-201ENST00000589622 1346 ntBASIC19.68■□□□□ 0.74
MSH6P52701 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
MSH6P52701 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.68■□□□□ 0.74
MSH6P52701 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH6P52701 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.68■□□□□ 0.74
MSH6P52701 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH6P52701 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.68■□□□□ 0.74
MSH6P52701 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
MSH6P52701 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC19.68■□□□□ 0.74
MSH6P52701 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 AC092384.3-202ENST00000564646 2873 ntBASIC19.68■□□□□ 0.74
MSH6P52701 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSH6P52701 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms