Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC211486.1-202ENST00000416371 468 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.19□□□□□ -0.46
HOXA1P49639 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.19□□□□□ -0.46
HOXA1P49639 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC211476.1-201ENST00000503899 468 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 SDHAP3-202ENST00000515467 728 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 AL512361.1-201ENST00000554200 418 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC004461.2-201ENST00000629517 803 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
HOXA1P49639 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HOXA1P49639 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC12.19□□□□□ -0.46
HOXA1P49639 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HOXA1P49639 AC015802.1-201ENST00000588104 1449 ntBASIC12.19□□□□□ -0.46
HOXA1P49639 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA1P49639 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXA1P49639 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXA1P49639 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 HNRNPFP1-201ENST00000391730 1133 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 BX842568.4-201ENST00000421222 227 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 AC022447.6-201ENST00000515522 438 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.18□□□□□ -0.46
HOXA1P49639 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.18□□□□□ -0.46
HOXA1P49639 TIMM17BP1-201ENST00000545713 516 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
HOXA1P49639 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXA1P49639 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 TEX28P1-201ENST00000613479 1221 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 TEX28P2-201ENST00000617764 1221 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.18□□□□□ -0.46
HOXA1P49639 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXA1P49639 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC12.18□□□□□ -0.46
HOXA1P49639 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA1P49639 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXA1P49639 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HOXA1P49639 AC112176.1-201ENST00000565428 3024 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HOXA1P49639 AC055811.4-201ENST00000624039 1754 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HOXA1P49639 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXA1P49639 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HOXA1P49639 RERG-209ENST00000546331 1383 ntTSL 2 BASIC12.18□□□□□ -0.46
HOXA1P49639 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC12.18□□□□□ -0.46
HOXA1P49639 AC018665.1-201ENST00000622927 1362 ntBASIC12.18□□□□□ -0.46
HOXA1P49639 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 UBTFL8-201ENST00000426903 2112 ntBASIC12.17□□□□□ -0.46
HOXA1P49639 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms