Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.78□□□□□ -0.2
RFX3P48380 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
RFX3P48380 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
RFX3P48380 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 MIR1202-201ENST00000408529 83 ntBASIC13.78□□□□□ -0.2
RFX3P48380 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 FAM8A4P-201ENST00000435433 1213 ntBASIC13.78□□□□□ -0.2
RFX3P48380 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.78□□□□□ -0.2
RFX3P48380 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
RFX3P48380 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.78□□□□□ -0.2
RFX3P48380 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.78□□□□□ -0.2
RFX3P48380 KRT90P-201ENST00000549264 1064 ntBASIC13.78□□□□□ -0.2
RFX3P48380 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.78□□□□□ -0.2
RFX3P48380 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.78□□□□□ -0.2
RFX3P48380 RAB43P1-201ENST00000561790 589 ntBASIC13.78□□□□□ -0.2
RFX3P48380 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.78□□□□□ -0.2
RFX3P48380 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
RFX3P48380 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.78□□□□□ -0.2
RFX3P48380 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.78□□□□□ -0.2
RFX3P48380 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 PDIA3P1-201ENST00000471856 1510 ntBASIC13.78□□□□□ -0.2
RFX3P48380 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
RFX3P48380 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 BX640514.1-201ENST00000583223 1918 ntBASIC13.78□□□□□ -0.2
RFX3P48380 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 AC009093.2-202ENST00000620513 2079 ntBASIC13.78□□□□□ -0.2
RFX3P48380 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 AC136759.1-202ENST00000530858 2194 ntBASIC13.78□□□□□ -0.2
RFX3P48380 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
RFX3P48380 AC005252.3-201ENST00000623855 2258 ntBASIC13.78□□□□□ -0.2
RFX3P48380 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RFX3P48380 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
RFX3P48380 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.2
RFX3P48380 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
RFX3P48380 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
RFX3P48380 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
RFX3P48380 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
RFX3P48380 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
RFX3P48380 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
RFX3P48380 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 RN7SKP230-201ENST00000365642 335 ntBASIC13.77□□□□□ -0.21
RFX3P48380 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.77□□□□□ -0.21
RFX3P48380 AL138725.1-201ENST00000407347 1314 ntBASIC13.77□□□□□ -0.21
RFX3P48380 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 AC112492.5-201ENST00000421897 457 ntBASIC13.77□□□□□ -0.21
RFX3P48380 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.77□□□□□ -0.21
RFX3P48380 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.77□□□□□ -0.21
RFX3P48380 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms