Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
HTTP42858 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.72■□□□□ 0.11
HTTP42858 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 AL591499.1-201ENST00000307155 1153 ntBASIC15.72■□□□□ 0.11
HTTP42858 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC15.72■□□□□ 0.11
HTTP42858 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC15.72■□□□□ 0.11
HTTP42858 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC15.72■□□□□ 0.11
HTTP42858 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 RN7SL69P-201ENST00000468423 272 ntBASIC15.72■□□□□ 0.11
HTTP42858 AC103724.2-201ENST00000520355 476 ntBASIC15.72■□□□□ 0.11
HTTP42858 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC15.72■□□□□ 0.11
HTTP42858 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC15.72■□□□□ 0.11
HTTP42858 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC15.72■□□□□ 0.11
HTTP42858 PXK-210ENST00000479241 2817 ntTSL 2 BASIC15.72■□□□□ 0.11
HTTP42858 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 LILRP2-202ENST00000413572 1383 ntBASIC15.72■□□□□ 0.11
HTTP42858 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
HTTP42858 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
HTTP42858 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC15.72■□□□□ 0.11
HTTP42858 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 MIR181D-201ENST00000384853 137 ntBASIC15.72■□□□□ 0.11
HTTP42858 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC15.72■□□□□ 0.11
HTTP42858 CA5BP1-205ENST00000435806 1064 ntBASIC15.72■□□□□ 0.11
HTTP42858 AC022121.1-201ENST00000484584 579 ntBASIC15.72■□□□□ 0.11
HTTP42858 AC100858.1-201ENST00000514059 1228 ntBASIC15.72■□□□□ 0.11
HTTP42858 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC15.72■□□□□ 0.11
HTTP42858 AL031673.1-201ENST00000611460 466 ntBASIC15.72■□□□□ 0.11
HTTP42858 MTHFR-210ENST00000641407 2387 ntBASIC15.72■□□□□ 0.11
HTTP42858 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 AC215219.1-201ENST00000400706 1817 ntBASIC15.72■□□□□ 0.11
HTTP42858 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 POP5-201ENST00000341039 913 ntTSL 2 BASIC15.72■□□□□ 0.11
HTTP42858 MIR632-201ENST00000385193 94 ntBASIC15.72■□□□□ 0.11
HTTP42858 AP000533.1-201ENST00000456143 1177 ntBASIC15.72■□□□□ 0.11
HTTP42858 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC15.72■□□□□ 0.11
HTTP42858 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
HTTP42858 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.72■□□□□ 0.11
HTTP42858 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 STX3-207ENST00000633708 3111 ntTSL 5 BASIC15.71■□□□□ 0.11
HTTP42858 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
HTTP42858 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC15.71■□□□□ 0.11
HTTP42858 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC15.71■□□□□ 0.11
HTTP42858 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC15.71■□□□□ 0.11
HTTP42858 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC15.71■□□□□ 0.11
HTTP42858 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC15.71■□□□□ 0.11
HTTP42858 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
HTTP42858 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC15.71■□□□□ 0.11
HTTP42858 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
HTTP42858 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 CCL19-202ENST00000378800 414 ntTSL 2 BASIC15.71■□□□□ 0.11
HTTP42858 MPV17-209ENST00000405983 859 ntTSL 5 BASIC15.71■□□□□ 0.11
HTTP42858 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC15.71■□□□□ 0.11
HTTP42858 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC15.71■□□□□ 0.11
HTTP42858 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC15.71■□□□□ 0.11
HTTP42858 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HTTP42858 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
HTTP42858 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HTTP42858 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HTTP42858 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HTTP42858 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC15.7■□□□□ 0.1
HTTP42858 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
HTTP42858 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC15.7■□□□□ 0.1
HTTP42858 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC15.7■□□□□ 0.1
HTTP42858 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
HTTP42858 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.7■□□□□ 0.1
HTTP42858 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HTTP42858 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms