Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
MSX2P35548 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX2P35548 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX2P35548 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 MEIS3P1-201ENST00000495167 958 ntBASIC13.94□□□□□ -0.18
MSX2P35548 TNRC18P1-201ENST00000502875 3650 ntBASIC13.94□□□□□ -0.18
MSX2P35548 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 AC092337.1-201ENST00000568699 1129 ntBASIC13.94□□□□□ -0.18
MSX2P35548 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX2P35548 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 AL844908.2-201ENST00000609461 460 ntBASIC13.94□□□□□ -0.18
MSX2P35548 AC023511.2-201ENST00000618803 211 ntBASIC13.94□□□□□ -0.18
MSX2P35548 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 PRSS30P-206ENST00000641773 873 ntBASIC13.94□□□□□ -0.18
MSX2P35548 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.94□□□□□ -0.18
MSX2P35548 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
MSX2P35548 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX2P35548 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.93□□□□□ -0.18
MSX2P35548 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX2P35548 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
MSX2P35548 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.93□□□□□ -0.18
MSX2P35548 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.93□□□□□ -0.18
MSX2P35548 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX2P35548 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.93□□□□□ -0.18
MSX2P35548 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.93□□□□□ -0.18
MSX2P35548 VDAC1P7-201ENST00000462417 847 ntBASIC13.93□□□□□ -0.18
MSX2P35548 AC027369.6-201ENST00000525520 931 ntBASIC13.93□□□□□ -0.18
MSX2P35548 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.93□□□□□ -0.18
MSX2P35548 AL512356.2-201ENST00000546955 174 ntBASIC13.93□□□□□ -0.18
MSX2P35548 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
MSX2P35548 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX2P35548 AC004466.1-201ENST00000599515 1080 ntBASIC13.93□□□□□ -0.18
MSX2P35548 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
MSX2P35548 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.93□□□□□ -0.18
MSX2P35548 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
MSX2P35548 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
MSX2P35548 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
MSX2P35548 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 TUBB8P4-201ENST00000511806 1324 ntBASIC13.92□□□□□ -0.18
MSX2P35548 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.92□□□□□ -0.18
MSX2P35548 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
MSX2P35548 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 AL139400.1-201ENST00000366220 510 ntBASIC13.92□□□□□ -0.18
MSX2P35548 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.92□□□□□ -0.18
MSX2P35548 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.92□□□□□ -0.18
MSX2P35548 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
MSX2P35548 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms