Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.31■□□□□ 0.04
BDNFP23560 PDIA3P2-201ENST00000428073 158 ntBASIC15.31■□□□□ 0.04
BDNFP23560 TSPY25P-201ENST00000429463 745 ntBASIC15.31■□□□□ 0.04
BDNFP23560 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.31■□□□□ 0.04
BDNFP23560 RN7SL720P-201ENST00000488178 304 ntBASIC15.31■□□□□ 0.04
BDNFP23560 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.31■□□□□ 0.04
BDNFP23560 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.31■□□□□ 0.04
BDNFP23560 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.31■□□□□ 0.04
BDNFP23560 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.31■□□□□ 0.04
BDNFP23560 FGFR3P5-201ENST00000564496 886 ntBASIC15.31■□□□□ 0.04
BDNFP23560 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC15.31■□□□□ 0.04
BDNFP23560 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.31■□□□□ 0.04
BDNFP23560 AC020922.3-201ENST00000595064 547 ntBASIC15.31■□□□□ 0.04
BDNFP23560 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
BDNFP23560 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
BDNFP23560 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
BDNFP23560 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.31■□□□□ 0.04
BDNFP23560 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.31■□□□□ 0.04
BDNFP23560 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.31■□□□□ 0.04
BDNFP23560 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
BDNFP23560 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
BDNFP23560 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 AL161932.2-201ENST00000435436 679 ntBASIC15.3■□□□□ 0.04
BDNFP23560 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.3■□□□□ 0.04
BDNFP23560 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 RHOQP1-201ENST00000555758 579 ntBASIC15.3■□□□□ 0.04
BDNFP23560 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 AC105129.2-201ENST00000559536 390 ntBASIC15.3■□□□□ 0.04
BDNFP23560 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 NAT9-211ENST00000580632 799 ntTSL 3 BASIC15.3■□□□□ 0.04
BDNFP23560 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC15.3■□□□□ 0.04
BDNFP23560 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.3■□□□□ 0.04
BDNFP23560 MIR6074-201ENST00000612054 107 ntBASIC15.3■□□□□ 0.04
BDNFP23560 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 OR2I1P-209ENST00000641730 5365 ntBASIC15.3■□□□□ 0.04
BDNFP23560 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
BDNFP23560 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
BDNFP23560 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
BDNFP23560 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 AC015909.3-201ENST00000572855 1794 ntBASIC15.29■□□□□ 0.04
BDNFP23560 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 FRMPD2B-201ENST00000431305 1347 ntBASIC15.29■□□□□ 0.04
BDNFP23560 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms