Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
NPHP4O75161 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
NPHP4O75161 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC19.79■□□□□ 0.76
NPHP4O75161 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
NPHP4O75161 DOC2GP-204ENST00000639052 2548 ntBASIC19.78■□□□□ 0.76
NPHP4O75161 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
NPHP4O75161 OR7E155P-201ENST00000412208 1014 ntBASIC19.78■□□□□ 0.76
NPHP4O75161 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC19.78■□□□□ 0.76
NPHP4O75161 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP4O75161 RNASEH2CP1-201ENST00000454281 502 ntBASIC19.78■□□□□ 0.76
NPHP4O75161 SRPK2P-201ENST00000523408 1100 ntBASIC19.78■□□□□ 0.76
NPHP4O75161 AC023051.2-201ENST00000541141 460 ntBASIC19.78■□□□□ 0.76
NPHP4O75161 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC19.78■□□□□ 0.76
NPHP4O75161 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC19.78■□□□□ 0.76
NPHP4O75161 AC112220.4-201ENST00000604982 1263 ntBASIC19.78■□□□□ 0.76
NPHP4O75161 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 AC232323.1-201ENST00000540724 2099 ntBASIC19.78■□□□□ 0.76
NPHP4O75161 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP4O75161 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC19.78■□□□□ 0.76
NPHP4O75161 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NPHP4O75161 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC19.77■□□□□ 0.76
NPHP4O75161 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC19.77■□□□□ 0.76
NPHP4O75161 AC093106.1-201ENST00000437271 352 ntBASIC19.77■□□□□ 0.76
NPHP4O75161 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC19.77■□□□□ 0.76
NPHP4O75161 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 CDC37P2-201ENST00000562287 1029 ntBASIC19.77■□□□□ 0.76
NPHP4O75161 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
NPHP4O75161 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP4O75161 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NPHP4O75161 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.77■□□□□ 0.76
NPHP4O75161 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC19.77■□□□□ 0.76
NPHP4O75161 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC19.77■□□□□ 0.76
NPHP4O75161 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.77■□□□□ 0.76
NPHP4O75161 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NPHP4O75161 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.77■□□□□ 0.75
NPHP4O75161 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
NPHP4O75161 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
NPHP4O75161 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.77■□□□□ 0.75
NPHP4O75161 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP4O75161 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NPHP4O75161 TUBB2BP1-201ENST00000404155 871 ntBASIC19.76■□□□□ 0.75
NPHP4O75161 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP4O75161 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP4O75161 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP4O75161 CD81-209ENST00000492627 886 ntTSL 3 BASIC19.76■□□□□ 0.75
NPHP4O75161 TMA16-204ENST00000508268 608 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP4O75161 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP4O75161 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP4O75161 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
NPHP4O75161 RN7SL300P-201ENST00000582522 318 ntBASIC19.76■□□□□ 0.75
NPHP4O75161 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC19.76■□□□□ 0.75
NPHP4O75161 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
NPHP4O75161 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
NPHP4O75161 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
NPHP4O75161 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP4O75161 MYADML-201ENST00000474610 2147 ntBASIC19.76■□□□□ 0.75
NPHP4O75161 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.76■□□□□ 0.75
NPHP4O75161 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
NPHP4O75161 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NPHP4O75161 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.76■□□□□ 0.75
NPHP4O75161 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 313.3 ms