Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC16.64■□□□□ 0.25
USP28Q96RU2 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 MIR1202-201ENST00000408529 83 ntBASIC16.64■□□□□ 0.25
USP28Q96RU2 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.64■□□□□ 0.25
USP28Q96RU2 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.64■□□□□ 0.25
USP28Q96RU2 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.64■□□□□ 0.25
USP28Q96RU2 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
USP28Q96RU2 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.64■□□□□ 0.25
USP28Q96RU2 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.64■□□□□ 0.25
USP28Q96RU2 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.64■□□□□ 0.25
USP28Q96RU2 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.64■□□□□ 0.25
USP28Q96RU2 AC008825.2-201ENST00000603374 718 ntBASIC16.64■□□□□ 0.25
USP28Q96RU2 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.64■□□□□ 0.25
USP28Q96RU2 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.64■□□□□ 0.25
USP28Q96RU2 AC015909.5-201ENST00000624336 2266 ntBASIC16.64■□□□□ 0.25
USP28Q96RU2 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USP28Q96RU2 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 TMBIM7P-202ENST00000641474 1516 ntBASIC16.64■□□□□ 0.25
USP28Q96RU2 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
USP28Q96RU2 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.64■□□□□ 0.25
USP28Q96RU2 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.64■□□□□ 0.25
USP28Q96RU2 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USP28Q96RU2 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.63■□□□□ 0.25
USP28Q96RU2 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.63■□□□□ 0.25
USP28Q96RU2 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.63■□□□□ 0.25
USP28Q96RU2 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.63■□□□□ 0.25
USP28Q96RU2 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 AL035414.1-201ENST00000451327 857 ntBASIC16.63■□□□□ 0.25
USP28Q96RU2 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
USP28Q96RU2 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.63■□□□□ 0.25
USP28Q96RU2 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.63■□□□□ 0.25
USP28Q96RU2 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.63■□□□□ 0.25
USP28Q96RU2 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.63■□□□□ 0.25
USP28Q96RU2 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 AC027307.3-201ENST00000594262 1100 ntBASIC16.63■□□□□ 0.25
USP28Q96RU2 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.63■□□□□ 0.25
USP28Q96RU2 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
USP28Q96RU2 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
USP28Q96RU2 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC16.63■□□□□ 0.25
USP28Q96RU2 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
USP28Q96RU2 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
USP28Q96RU2 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP28Q96RU2 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP28Q96RU2 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP28Q96RU2 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP28Q96RU2 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
USP28Q96RU2 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP28Q96RU2 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP28Q96RU2 SHC1P1-201ENST00000425230 1745 ntBASIC16.62■□□□□ 0.25
USP28Q96RU2 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
USP28Q96RU2 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
USP28Q96RU2 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP28Q96RU2 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.62■□□□□ 0.25
USP28Q96RU2 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP28Q96RU2 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC16.62■□□□□ 0.25
USP28Q96RU2 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms