Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MST1R-215ENST00000621387 4449 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 USP35-204ENST00000530267 2419 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 GHSR-202ENST00000427970 912 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MARK2P5-201ENST00000507649 634 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ZNF423-207ENST00000567169 4017 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SLC12A6-205ENST00000458406 4425 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 POFUT2-213ENST00000612472 2959 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SNX21-203ENST00000372541 771 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PTPA-218ENST00000435132 618 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RN7SL774P-201ENST00000577467 290 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 YRDCP1-201ENST00000621419 643 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC105250.1-201ENST00000509378 2057 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 PIK3R5-202ENST00000447110 4495 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 NLGN3-205ENST00000536169 3863 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MAP10-201ENST00000418460 3516 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC013268.4-201ENST00000637413 2228 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 OTOF-203ENST00000339598 4756 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 CICP4-201ENST00000447359 2812 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 IL10RA-201ENST00000227752 3695 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 FAM8A4P-201ENST00000435433 1213 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 EHF-205ENST00000527935 557 ntTSL 2 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 AL160314.3-201ENST00000556041 767 ntBASIC4.56□□□□□ -1.68
SYNE1Q8NF91 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SYNE1Q8NF91 FCHSD1-201ENST00000435817 4320 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC090616.6-203ENST00000579186 1945 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 369.4 ms