Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
SMC1BQ8NDV3 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AC013726.1-201ENST00000563747 2285 ntBASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 SNRPCP15-201ENST00000424055 192 ntBASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AC145285.5-201ENST00000562217 361 ntBASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AC079414.2-201ENST00000567157 1104 ntBASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 BRD7P5-201ENST00000299197 1822 ntBASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMC1BQ8NDV3 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AC138761.6-201ENST00000583997 1423 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 BX088651.3-201ENST00000418155 352 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 SAP18P2-201ENST00000434334 459 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AC092903.1-201ENST00000466506 262 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 RN7SL440P-201ENST00000577855 343 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 NT5C-204ENST00000578337 582 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 PRMT1P1-201ENST00000604252 1009 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 URAHP-205ENST00000610227 398 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 AL591471.1-201ENST00000621855 229 ntBASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms