Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AC006001.1-201ENST00000325130 474 ntBASIC16.6■□□□□ 0.25
ATL3Q6DD88 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 FAM197Y7-201ENST00000432892 766 ntBASIC16.6■□□□□ 0.25
ATL3Q6DD88 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 AL355994.2-201ENST00000447882 704 ntBASIC16.6■□□□□ 0.25
ATL3Q6DD88 RN7SL837P-201ENST00000463010 287 ntBASIC16.6■□□□□ 0.25
ATL3Q6DD88 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 AL591163.1-201ENST00000641757 987 ntBASIC16.6■□□□□ 0.25
ATL3Q6DD88 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATL3Q6DD88 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
ATL3Q6DD88 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 CHMP1AP1-201ENST00000445563 662 ntBASIC16.59■□□□□ 0.25
ATL3Q6DD88 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 AC233724.13-201ENST00000598383 410 ntBASIC16.59■□□□□ 0.25
ATL3Q6DD88 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATL3Q6DD88 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.59■□□□□ 0.25
ATL3Q6DD88 AL591122.2-201ENST00000624125 1853 ntBASIC16.59■□□□□ 0.25
ATL3Q6DD88 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.58■□□□□ 0.25
ATL3Q6DD88 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.58■□□□□ 0.25
ATL3Q6DD88 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ATL3Q6DD88 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
ATL3Q6DD88 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC16.58■□□□□ 0.25
ATL3Q6DD88 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
ATL3Q6DD88 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ATL3Q6DD88 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 ST13P19-201ENST00000442505 1124 ntBASIC16.58■□□□□ 0.24
ATL3Q6DD88 RN7SL752P-201ENST00000463779 287 ntBASIC16.58■□□□□ 0.24
ATL3Q6DD88 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 C2orf69P2-201ENST00000562032 1123 ntBASIC16.58■□□□□ 0.24
ATL3Q6DD88 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.58■□□□□ 0.24
ATL3Q6DD88 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.58■□□□□ 0.24
ATL3Q6DD88 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 AL354989.2-201ENST00000435838 1540 ntBASIC16.58■□□□□ 0.24
ATL3Q6DD88 PDIA3P1-201ENST00000471856 1510 ntBASIC16.58■□□□□ 0.24
ATL3Q6DD88 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
ATL3Q6DD88 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms