Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 NAA10-205ENST00000393712 908 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC10.04□□□□□ -0.8
PRKDCP78527 PRDX2P3-201ENST00000515779 586 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC10.04□□□□□ -0.8
PRKDCP78527 AC010776.3-201ENST00000617349 424 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 USP39-220ENST00000613444 2161 ntTSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 OR2W2P-201ENST00000406313 909 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 IL6RP1-201ENST00000417848 1273 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC10.04□□□□□ -0.8
PRKDCP78527 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC10.04□□□□□ -0.8
PRKDCP78527 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC10.04□□□□□ -0.8
PRKDCP78527 AC132825.4-202ENST00000578792 434 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
PRKDCP78527 AD000864.1-201ENST00000624076 2295 ntBASIC10.04□□□□□ -0.8
PRKDCP78527 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 SF1-209ENST00000433274 2317 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 EEF1GP2-201ENST00000509352 1243 ntBASIC10.03□□□□□ -0.8
PRKDCP78527 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC10.03□□□□□ -0.8
PRKDCP78527 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC10.03□□□□□ -0.8
PRKDCP78527 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC10.03□□□□□ -0.8
PRKDCP78527 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 RN7SL638P-201ENST00000494527 290 ntBASIC10.03□□□□□ -0.8
PRKDCP78527 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 AC006511.4-201ENST00000631571 561 ntTSL 3 BASIC10.03□□□□□ -0.8
PRKDCP78527 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC10.03□□□□□ -0.8
PRKDCP78527 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 AC011477.7-201ENST00000617163 1440 ntBASIC10.03□□□□□ -0.8
PRKDCP78527 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 RIPPLY2-201ENST00000369687 521 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC10.03□□□□□ -0.8
PRKDCP78527 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC10.03□□□□□ -0.8
PRKDCP78527 RN7SL677P-201ENST00000466970 319 ntBASIC10.03□□□□□ -0.8
PRKDCP78527 AC012100.1-201ENST00000470304 282 ntBASIC10.03□□□□□ -0.8
PRKDCP78527 JPT1-205ENST00000470924 663 ntTSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 ZNF551-202ENST00000596085 469 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC10.03□□□□□ -0.8
PRKDCP78527 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
PRKDCP78527 AL356583.1-201ENST00000398739 1371 ntBASIC10.03□□□□□ -0.8
PRKDCP78527 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC10.03□□□□□ -0.8
PRKDCP78527 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.8
PRKDCP78527 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.8
PRKDCP78527 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
PRKDCP78527 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
PRKDCP78527 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
PRKDCP78527 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
PRKDCP78527 CLK2P1-201ENST00000416636 1294 ntBASIC10.02□□□□□ -0.8
PRKDCP78527 RN7SL111P-201ENST00000468841 285 ntBASIC10.02□□□□□ -0.8
PRKDCP78527 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC10.02□□□□□ -0.8
PRKDCP78527 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC10.02□□□□□ -0.8
PRKDCP78527 AC022382.1-201ENST00000602768 336 ntBASIC10.02□□□□□ -0.8
PRKDCP78527 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC10.02□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms