Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCNA1P78396 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCNA1P78396 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCNA1P78396 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCNA1P78396 AL596257.1-201ENST00000641463 2694 ntBASIC16.4■□□□□ 0.22
CCNA1P78396 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.4■□□□□ 0.22
CCNA1P78396 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CCNA1P78396 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCNA1P78396 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCNA1P78396 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCNA1P78396 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.4■□□□□ 0.22
CCNA1P78396 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC16.4■□□□□ 0.22
CCNA1P78396 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.39■□□□□ 0.22
CCNA1P78396 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCNA1P78396 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCNA1P78396 STK16-203ENST00000409516 895 ntTSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.39■□□□□ 0.21
CCNA1P78396 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 AC145285.5-201ENST00000562217 361 ntBASIC16.39■□□□□ 0.21
CCNA1P78396 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC16.39■□□□□ 0.21
CCNA1P78396 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
CCNA1P78396 AC011471.3-201ENST00000623576 402 ntBASIC16.39■□□□□ 0.21
CCNA1P78396 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CCNA1P78396 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CCNA1P78396 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 CTBP2P8-201ENST00000422584 1330 ntBASIC16.39■□□□□ 0.21
CCNA1P78396 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC16.39■□□□□ 0.21
CCNA1P78396 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.39■□□□□ 0.21
CCNA1P78396 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCNA1P78396 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
CCNA1P78396 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CCNA1P78396 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.38■□□□□ 0.21
CCNA1P78396 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC16.38■□□□□ 0.21
CCNA1P78396 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CCNA1P78396 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.38■□□□□ 0.21
CCNA1P78396 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CCNA1P78396 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CCNA1P78396 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC16.38■□□□□ 0.21
CCNA1P78396 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC16.38■□□□□ 0.21
CCNA1P78396 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.38■□□□□ 0.21
CCNA1P78396 AL161932.2-201ENST00000435436 679 ntBASIC16.38■□□□□ 0.21
CCNA1P78396 GNG10P1-201ENST00000452289 199 ntBASIC16.38■□□□□ 0.21
CCNA1P78396 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC16.38■□□□□ 0.21
CCNA1P78396 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CCNA1P78396 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.38■□□□□ 0.21
CCNA1P78396 AC011247.3-201ENST00000603297 438 ntBASIC16.38■□□□□ 0.21
CCNA1P78396 AC006158.1-201ENST00000610661 249 ntBASIC16.38■□□□□ 0.21
CCNA1P78396 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
CCNA1P78396 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CCNA1P78396 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
CCNA1P78396 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
CCNA1P78396 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCNA1P78396 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms