Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.11□□□□□ -0.15
FOXA1P55317 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.11□□□□□ -0.15
FOXA1P55317 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.1□□□□□ -0.15
FOXA1P55317 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 AC073548.1-201ENST00000624088 1882 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
FOXA1P55317 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.1□□□□□ -0.15
FOXA1P55317 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.1□□□□□ -0.15
FOXA1P55317 AC009093.10-201ENST00000641956 1442 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.1□□□□□ -0.15
FOXA1P55317 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 AC005229.1-201ENST00000392885 409 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.1□□□□□ -0.15
FOXA1P55317 USP32P1-208ENST00000506594 1164 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.1□□□□□ -0.15
FOXA1P55317 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.1□□□□□ -0.15
FOXA1P55317 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.1□□□□□ -0.15
FOXA1P55317 AC005586.2-201ENST00000563946 837 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.1□□□□□ -0.15
FOXA1P55317 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 AC073413.1-201ENST00000603927 732 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 AC244669.2-201ENST00000612320 853 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 AL928654.5-201ENST00000624831 2501 ntBASIC14.1□□□□□ -0.15
FOXA1P55317 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.1□□□□□ -0.15
FOXA1P55317 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.1□□□□□ -0.15
FOXA1P55317 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
FOXA1P55317 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA1P55317 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA1P55317 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA1P55317 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA1P55317 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms