Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RFX3P48380 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 FTLP10-202ENST00000505798 471 ntBASIC13.8□□□□□ -0.2
RFX3P48380 AL391280.1-201ENST00000506969 1062 ntBASIC13.8□□□□□ -0.2
RFX3P48380 AC022447.6-201ENST00000515522 438 ntBASIC13.8□□□□□ -0.2
RFX3P48380 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 AC078819.1-201ENST00000547454 765 ntBASIC13.8□□□□□ -0.2
RFX3P48380 AC012085.1-201ENST00000548270 765 ntBASIC13.8□□□□□ -0.2
RFX3P48380 CR383656.12-201ENST00000549567 513 ntBASIC13.8□□□□□ -0.2
RFX3P48380 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.8□□□□□ -0.2
RFX3P48380 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.8□□□□□ -0.2
RFX3P48380 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.8□□□□□ -0.2
RFX3P48380 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 TLL2-201ENST00000357947 6756 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 AC092135.3-201ENST00000624151 1846 ntBASIC13.8□□□□□ -0.2
RFX3P48380 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.8□□□□□ -0.2
RFX3P48380 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.8□□□□□ -0.2
RFX3P48380 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RFX3P48380 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
RFX3P48380 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.79□□□□□ -0.2
RFX3P48380 TLE1P1-201ENST00000422965 589 ntBASIC13.79□□□□□ -0.2
RFX3P48380 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 GAPDHP21-201ENST00000450301 1010 ntBASIC13.79□□□□□ -0.2
RFX3P48380 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
RFX3P48380 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.79□□□□□ -0.2
RFX3P48380 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 KRT17P8-201ENST00000540749 863 ntBASIC13.79□□□□□ -0.2
RFX3P48380 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 AC132938.4-201ENST00000623835 848 ntBASIC13.79□□□□□ -0.2
RFX3P48380 PFAS-212ENST00000625942 396 ntTSL 5 BASIC13.79□□□□□ -0.2
RFX3P48380 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RFX3P48380 AL354702.1-201ENST00000442006 1960 ntBASIC13.79□□□□□ -0.2
RFX3P48380 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms