Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.02□□□□□ -0.48
CDX1P47902 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
CDX1P47902 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
CDX1P47902 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CDX1P47902 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.02□□□□□ -0.49
CDX1P47902 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC12.02□□□□□ -0.49
CDX1P47902 BRF1-202ENST00000379932 884 ntTSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
CDX1P47902 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 BOLA2P3-201ENST00000404566 256 ntBASIC12.02□□□□□ -0.49
CDX1P47902 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.02□□□□□ -0.49
CDX1P47902 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12.02□□□□□ -0.49
CDX1P47902 TDH-203ENST00000531764 1110 ntBASIC12.02□□□□□ -0.49
CDX1P47902 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 AC008735.3-201ENST00000596646 500 ntBASIC12.02□□□□□ -0.49
CDX1P47902 AC233724.13-201ENST00000598383 410 ntBASIC12.02□□□□□ -0.49
CDX1P47902 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.02□□□□□ -0.49
CDX1P47902 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC12.02□□□□□ -0.49
CDX1P47902 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
CDX1P47902 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.02□□□□□ -0.49
CDX1P47902 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 AGER-206ENST00000375070 1463 ntTSL 5 BASIC12.02□□□□□ -0.49
CDX1P47902 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CDX1P47902 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 AC023024.2-201ENST00000623561 1993 ntBASIC12.01□□□□□ -0.49
CDX1P47902 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
CDX1P47902 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
CDX1P47902 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 ATP5G2P4-201ENST00000442175 420 ntBASIC12.01□□□□□ -0.49
CDX1P47902 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC12.01□□□□□ -0.49
CDX1P47902 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.01□□□□□ -0.49
CDX1P47902 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CDX1P47902 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
CDX1P47902 GAPDHP40-201ENST00000505218 1006 ntBASIC12.01□□□□□ -0.49
CDX1P47902 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms