Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
PTPN4P29074 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.73□□□□□ -0.05
PTPN4P29074 AL355864.2-201ENST00000447420 863 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 BCRP2-202ENST00000447763 634 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 BNIP3P42-201ENST00000454982 569 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 KRT18P43-201ENST00000469825 1281 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 BCRP6-201ENST00000510112 632 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 BCRP7-201ENST00000511549 544 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.73□□□□□ -0.05
PTPN4P29074 BNIP3P29-201ENST00000598302 571 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.73□□□□□ -0.05
PTPN4P29074 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN4P29074 AC011447.5-201ENST00000616168 564 ntBASIC14.73□□□□□ -0.05
PTPN4P29074 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
PTPN4P29074 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
PTPN4P29074 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN4P29074 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN4P29074 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN4P29074 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN4P29074 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN4P29074 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN4P29074 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PTPN4P29074 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.72□□□□□ -0.05
PTPN4P29074 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PTPN4P29074 AC020910.6-201ENST00000623084 1459 ntBASIC14.72□□□□□ -0.05
PTPN4P29074 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN4P29074 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN4P29074 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN4P29074 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 AP001889.1-201ENST00000525414 633 ntBASIC14.72□□□□□ -0.05
PTPN4P29074 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN4P29074 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.72□□□□□ -0.05
PTPN4P29074 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 AC000095.1-201ENST00000603208 874 ntBASIC14.72□□□□□ -0.05
PTPN4P29074 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN4P29074 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
PTPN4P29074 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
PTPN4P29074 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 AC012617.1-204ENST00000586340 2305 ntBASIC14.72□□□□□ -0.05
PTPN4P29074 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.72□□□□□ -0.05
PTPN4P29074 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PTPN4P29074 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PTPN4P29074 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN4P29074 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN4P29074 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
PTPN4P29074 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTPN4P29074 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PTPN4P29074 AL121723.1-201ENST00000445194 1519 ntBASIC14.71□□□□□ -0.05
PTPN4P29074 REXO1L6P-201ENST00000603433 1515 ntBASIC14.71□□□□□ -0.05
PTPN4P29074 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms