Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.58■□□□□ 0.24
SMARCA1P28370 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 AL353770.1-201ENST00000614915 403 ntBASIC16.58■□□□□ 0.24
SMARCA1P28370 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.58■□□□□ 0.24
SMARCA1P28370 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.58■□□□□ 0.24
SMARCA1P28370 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.58■□□□□ 0.24
SMARCA1P28370 PCDHA3-202ENST00000532566 4594 ntBASIC16.58■□□□□ 0.24
SMARCA1P28370 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SMARCA1P28370 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
SMARCA1P28370 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SMARCA1P28370 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SMARCA1P28370 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
SMARCA1P28370 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 AC023908.3-201ENST00000564211 3047 ntBASIC16.58■□□□□ 0.24
SMARCA1P28370 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.58■□□□□ 0.24
SMARCA1P28370 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.58■□□□□ 0.24
SMARCA1P28370 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
SMARCA1P28370 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SMARCA1P28370 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC16.57■□□□□ 0.24
SMARCA1P28370 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.57■□□□□ 0.24
SMARCA1P28370 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 BCYRN1-201ENST00000418539 200 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 AL133466.1-201ENST00000447582 150 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 AC073150.1-201ENST00000450406 1084 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.57■□□□□ 0.24
SMARCA1P28370 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 AC026803.1-201ENST00000569130 274 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
SMARCA1P28370 RN7SL574P-201ENST00000581512 297 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 MIR4754-201ENST00000582477 89 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 AC091812.3-201ENST00000621362 345 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 CU633904.3-201ENST00000624042 1029 ntBASIC16.57■□□□□ 0.24
SMARCA1P28370 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SMARCA1P28370 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
SMARCA1P28370 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SMARCA1P28370 BRD7P5-201ENST00000299197 1822 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SMARCA1P28370 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 SLC25A24P2-201ENST00000415059 510 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 RPS9P1-201ENST00000419943 583 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.56■□□□□ 0.24
SMARCA1P28370 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
SMARCA1P28370 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 CHMP4BP1-201ENST00000556017 588 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 AC242376.1-201ENST00000559033 726 ntBASIC16.56■□□□□ 0.24
SMARCA1P28370 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.56■□□□□ 0.24
SMARCA1P28370 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.56■□□□□ 0.24
SMARCA1P28370 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.56■□□□□ 0.24
SMARCA1P28370 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SMARCA1P28370 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms