Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CSB-PGBD3P0DP91 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 AC008741.2-201ENST00000612792 3115 ntBASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 RN7SL564P-201ENST00000496309 250 ntBASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 AC010976.2-201ENST00000609697 852 ntBASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CSB-PGBD3P0DP91 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC19.08■□□□□ 0.65
CSB-PGBD3P0DP91 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CSB-PGBD3P0DP91 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.08■□□□□ 0.65
CSB-PGBD3P0DP91 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC19.08■□□□□ 0.65
CSB-PGBD3P0DP91 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CSB-PGBD3P0DP91 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CSB-PGBD3P0DP91 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 ACTG1P19-201ENST00000418987 1116 ntBASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 DDX39AP1-201ENST00000445147 1181 ntBASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 AP005264.6-204ENST00000588436 719 ntBASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CSB-PGBD3P0DP91 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 RN7SL494P-201ENST00000461517 304 ntBASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 FAM86KP-201ENST00000509817 987 ntBASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 AC005586.2-201ENST00000563946 837 ntBASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 AL118516.1-201ENST00000564152 670 ntBASIC19.07■□□□□ 0.64
CSB-PGBD3P0DP91 NDUFB10P1-201ENST00000567319 521 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms