Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 AL031713.1-201ENST00000564813 661 ntBASIC18.78■□□□□ 0.6
COL3A1P02461 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC18.78■□□□□ 0.6
COL3A1P02461 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 AC007686.3-201ENST00000619017 3487 ntBASIC18.78■□□□□ 0.6
COL3A1P02461 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC18.78■□□□□ 0.6
COL3A1P02461 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 IL9RP3-201ENST00000442856 1674 ntBASIC18.78■□□□□ 0.6
COL3A1P02461 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
COL3A1P02461 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL3A1P02461 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.78■□□□□ 0.6
COL3A1P02461 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 RNVU1-8-201ENST00000364272 125 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 RN7SKP109-201ENST00000410592 316 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 AC025186.1-201ENST00000478174 870 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.77■□□□□ 0.6
COL3A1P02461 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.77■□□□□ 0.6
COL3A1P02461 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC18.77■□□□□ 0.6
COL3A1P02461 AP003419.4-201ENST00000616071 517 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 AC011491.1-203ENST00000637688 543 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC18.77■□□□□ 0.6
COL3A1P02461 PDXDC2P-206ENST00000534700 1315 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 ODCP-201ENST00000459650 1639 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.77■□□□□ 0.6
COL3A1P02461 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
COL3A1P02461 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC18.77■□□□□ 0.6
COL3A1P02461 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 AC117503.4-201ENST00000623229 1418 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL3A1P02461 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
COL3A1P02461 AC139749.1-202ENST00000617529 3139 ntBASIC18.77■□□□□ 0.6
COL3A1P02461 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
COL3A1P02461 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
COL3A1P02461 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL3A1P02461 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL3A1P02461 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
COL3A1P02461 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL3A1P02461 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC18.77■□□□□ 0.59
COL3A1P02461 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.77■□□□□ 0.59
COL3A1P02461 AC092573.1-201ENST00000433054 884 ntBASIC18.77■□□□□ 0.59
COL3A1P02461 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL3A1P02461 AC018638.5-201ENST00000450885 754 ntBASIC18.77■□□□□ 0.59
COL3A1P02461 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.77■□□□□ 0.59
COL3A1P02461 CD81-209ENST00000492627 886 ntTSL 3 BASIC18.77■□□□□ 0.59
COL3A1P02461 DNM1P30-201ENST00000563586 452 ntBASIC18.77■□□□□ 0.59
COL3A1P02461 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.77■□□□□ 0.59
COL3A1P02461 AC091769.1-201ENST00000619576 568 ntBASIC18.77■□□□□ 0.59
COL3A1P02461 COX6A1P2-201ENST00000620597 330 ntBASIC18.77■□□□□ 0.59
COL3A1P02461 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
COL3A1P02461 AL590824.1-201ENST00000403828 1349 ntBASIC18.77■□□□□ 0.59
COL3A1P02461 TEKT4P2-202ENST00000559466 1312 ntBASIC18.77■□□□□ 0.59
COL3A1P02461 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC18.76■□□□□ 0.59
COL3A1P02461 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL3A1P02461 GOLGA8DP-202ENST00000341390 2184 ntBASIC18.76■□□□□ 0.59
COL3A1P02461 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.76■□□□□ 0.59
COL3A1P02461 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL3A1P02461 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
COL3A1P02461 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC18.76■□□□□ 0.59
COL3A1P02461 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 HIST2H2BA-201ENST00000412169 381 ntBASIC18.76■□□□□ 0.59
COL3A1P02461 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.76■□□□□ 0.59
COL3A1P02461 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC18.76■□□□□ 0.59
COL3A1P02461 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
COL3A1P02461 AL132994.1-201ENST00000554098 400 ntBASIC18.76■□□□□ 0.59
COL3A1P02461 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC18.76■□□□□ 0.59
COL3A1P02461 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
COL3A1P02461 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms