Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 TUBB8P4-201ENST00000511806 1324 ntBASIC11.03□□□□□ -0.64
HLA-DQA1P01909 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
HLA-DQA1P01909 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 AC125807.2-201ENST00000513358 3514 ntBASIC11.02□□□□□ -0.64
HLA-DQA1P01909 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 MYT1-201ENST00000328439 5535 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.02□□□□□ -0.64
HLA-DQA1P01909 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 FAM58CP-201ENST00000435741 640 ntBASIC11.02□□□□□ -0.65
HLA-DQA1P01909 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 AC092865.6-201ENST00000642101 219 ntBASIC11.02□□□□□ -0.65
HLA-DQA1P01909 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 POU5F2-201ENST00000606183 8418 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 F2-205ENST00000530231 1849 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC11.02□□□□□ -0.65
HLA-DQA1P01909 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC11.01□□□□□ -0.65
HLA-DQA1P01909 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms