Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.37■□□□□ 0.53
NPHP1O15259 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC18.37■□□□□ 0.53
NPHP1O15259 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.37■□□□□ 0.53
NPHP1O15259 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.37■□□□□ 0.53
NPHP1O15259 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.37■□□□□ 0.53
NPHP1O15259 AC107464.3-201ENST00000609172 737 ntBASIC18.37■□□□□ 0.53
NPHP1O15259 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC18.37■□□□□ 0.53
NPHP1O15259 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
NPHP1O15259 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.37■□□□□ 0.53
NPHP1O15259 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.37■□□□□ 0.53
NPHP1O15259 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC18.37■□□□□ 0.53
NPHP1O15259 TMBIM7P-202ENST00000641474 1516 ntBASIC18.37■□□□□ 0.53
NPHP1O15259 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.37■□□□□ 0.53
NPHP1O15259 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
NPHP1O15259 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC18.36■□□□□ 0.53
NPHP1O15259 R3HDM2P2-201ENST00000401880 2116 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
NPHP1O15259 AC097065.1-201ENST00000425737 517 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.36■□□□□ 0.53
NPHP1O15259 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 PIN4P1-201ENST00000451079 396 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 DUX4L50-201ENST00000455245 715 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC18.36■□□□□ 0.53
NPHP1O15259 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC18.36■□□□□ 0.53
NPHP1O15259 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.36■□□□□ 0.53
NPHP1O15259 NUDT4P2-201ENST00000578341 546 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 AL136172.1-201ENST00000598590 1394 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.36■□□□□ 0.53
NPHP1O15259 AC073911.3-201ENST00000624401 631 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 AL161773.1-201ENST00000624845 863 ntBASIC18.36■□□□□ 0.53
NPHP1O15259 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NPHP1O15259 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.36■□□□□ 0.53
NPHP1O15259 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 API5-203ENST00000455725 2257 ntTSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 AC020658.6-201ENST00000623564 1870 ntBASIC18.35■□□□□ 0.53
NPHP1O15259 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
NPHP1O15259 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 MIR557-201ENST00000385239 98 ntBASIC18.35■□□□□ 0.53
NPHP1O15259 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.35■□□□□ 0.53
NPHP1O15259 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NPHP1O15259 AL157792.1-201ENST00000488281 530 ntBASIC18.35■□□□□ 0.53
NPHP1O15259 IGHV3-37-201ENST00000518544 340 ntBASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms