Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 TUBB8P4-201ENST00000511806 1324 ntBASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4AQ8WYN0 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 AC072061.1-201ENST00000569710 2234 ntBASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 ALG3P1-201ENST00000508806 1114 ntBASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 GNRHR2-203ENST00000581100 1187 ntBASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
ATG4AQ8WYN0 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 MIR4683-201ENST00000579659 81 ntBASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 PPT1-213ENST00000641319 2388 ntBASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
ATG4AQ8WYN0 AL022313.4-201ENST00000562756 2046 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms