Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 AL596325.1-201ENST00000563991 1082 ntBASIC13.05□□□□□ -0.32
SRP9P49458 AC009486.1-201ENST00000569860 813 ntBASIC13.05□□□□□ -0.32
SRP9P49458 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.05□□□□□ -0.32
SRP9P49458 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.05□□□□□ -0.32
SRP9P49458 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.05□□□□□ -0.32
SRP9P49458 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.05□□□□□ -0.32
SRP9P49458 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.05□□□□□ -0.32
SRP9P49458 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.05□□□□□ -0.32
SRP9P49458 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.05□□□□□ -0.32
SRP9P49458 AC105233.6-201ENST00000642093 218 ntBASIC13.05□□□□□ -0.32
SRP9P49458 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC13.05□□□□□ -0.32
SRP9P49458 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
SRP9P49458 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.05□□□□□ -0.32
SRP9P49458 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC13.05□□□□□ -0.32
SRP9P49458 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
SRP9P49458 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SRP9P49458 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
SRP9P49458 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
SRP9P49458 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.05□□□□□ -0.32
SRP9P49458 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
SRP9P49458 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.04□□□□□ -0.32
SRP9P49458 KRT17P7-201ENST00000451704 1104 ntBASIC13.04□□□□□ -0.32
SRP9P49458 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.04□□□□□ -0.32
SRP9P49458 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.04□□□□□ -0.32
SRP9P49458 AP001063.1-201ENST00000568332 529 ntBASIC13.04□□□□□ -0.32
SRP9P49458 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.04□□□□□ -0.32
SRP9P49458 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
SRP9P49458 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.04□□□□□ -0.32
SRP9P49458 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
SRP9P49458 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.04□□□□□ -0.32
SRP9P49458 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
SRP9P49458 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
SRP9P49458 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
SRP9P49458 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.03□□□□□ -0.32
SRP9P49458 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
SRP9P49458 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
SRP9P49458 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
SRP9P49458 AL365181.3-201ENST00000605886 3222 ntBASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms