Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
BRCA1P38398 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC17.01■□□□□ 0.31
BRCA1P38398 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC17.01■□□□□ 0.31
BRCA1P38398 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 ASS1P1-201ENST00000402854 1237 ntBASIC17.01■□□□□ 0.31
BRCA1P38398 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC17.01■□□□□ 0.31
BRCA1P38398 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
BRCA1P38398 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC17.01■□□□□ 0.31
BRCA1P38398 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
BRCA1P38398 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC17.01■□□□□ 0.31
BRCA1P38398 ACTBP9-201ENST00000587663 1099 ntBASIC17.01■□□□□ 0.31
BRCA1P38398 AC021321.1-201ENST00000607397 1113 ntBASIC17.01■□□□□ 0.31
BRCA1P38398 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
BRCA1P38398 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
BRCA1P38398 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC17.01■□□□□ 0.31
BRCA1P38398 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
BRCA1P38398 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17■□□□□ 0.31
BRCA1P38398 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17■□□□□ 0.31
BRCA1P38398 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17■□□□□ 0.31
BRCA1P38398 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17■□□□□ 0.31
BRCA1P38398 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 RFNG-202ENST00000429557 994 ntTSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC17■□□□□ 0.31
BRCA1P38398 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC17■□□□□ 0.31
BRCA1P38398 UGT1A12P-201ENST00000447084 853 ntBASIC17■□□□□ 0.31
BRCA1P38398 AL161727.1-201ENST00000457409 530 ntBASIC17■□□□□ 0.31
BRCA1P38398 ALDOAP1-201ENST00000491506 1078 ntBASIC17■□□□□ 0.31
BRCA1P38398 RN7SL134P-201ENST00000579756 303 ntBASIC17■□□□□ 0.31
BRCA1P38398 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 SNX20-205ENST00000610485 557 ntTSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC17■□□□□ 0.31
BRCA1P38398 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
BRCA1P38398 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
BRCA1P38398 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
BRCA1P38398 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
BRCA1P38398 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 CCL19-202ENST00000378800 414 ntTSL 2 BASIC16.99■□□□□ 0.31
BRCA1P38398 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC16.99■□□□□ 0.31
BRCA1P38398 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC16.99■□□□□ 0.31
BRCA1P38398 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
BRCA1P38398 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 AC011477.7-201ENST00000617163 1440 ntBASIC16.99■□□□□ 0.31
BRCA1P38398 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.99■□□□□ 0.31
BRCA1P38398 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.99■□□□□ 0.31
BRCA1P38398 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 PPT1-215ENST00000641471 2368 ntBASIC16.99■□□□□ 0.31
BRCA1P38398 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
BRCA1P38398 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC16.99■□□□□ 0.31
BRCA1P38398 AL121994.1-201ENST00000413189 402 ntBASIC16.99■□□□□ 0.31
BRCA1P38398 HLA-W-207ENST00000439514 771 ntBASIC16.99■□□□□ 0.31
BRCA1P38398 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC16.99■□□□□ 0.31
BRCA1P38398 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms