Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 FP236241.2-201ENST00000624906 1185 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AL033527.5-201ENST00000641382 801 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 LSS-211ENST00000522411 2523 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 HSPA8P5-201ENST00000456928 2069 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AC011840.2-201ENST00000563063 1520 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 AC130686.1-201ENST00000622936 2466 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 B9D1-203ENST00000395615 805 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 TLE1P1-201ENST00000422965 589 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 GPR53P-205ENST00000457298 1084 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 AC093433.1-201ENST00000458048 571 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 RN7SL837P-201ENST00000463010 287 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 KRT18P25-201ENST00000508931 1278 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 AC131206.1-201ENST00000538078 1211 ntBASIC11.19□□□□□ -0.62
HLA-DMBP28068 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 PAM16-204ENST00000571941 674 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC11.19□□□□□ -0.62
HLA-DMBP28068 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
HLA-DMBP28068 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC11.18□□□□□ -0.62
HLA-DMBP28068 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms