Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 AL596276.2-201ENST00000447525 331 ntBASIC12.44□□□□□ -0.42
USF1P22415 EEF1DP6-201ENST00000449232 372 ntBASIC12.44□□□□□ -0.42
USF1P22415 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC12.44□□□□□ -0.42
USF1P22415 AC090857.1-201ENST00000527400 390 ntBASIC12.44□□□□□ -0.42
USF1P22415 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 MIR4722-201ENST00000578292 60 ntBASIC12.44□□□□□ -0.42
USF1P22415 RN7SL574P-201ENST00000581512 297 ntBASIC12.44□□□□□ -0.42
USF1P22415 MIR4706-201ENST00000582134 82 ntBASIC12.44□□□□□ -0.42
USF1P22415 CENPX-208ENST00000584347 799 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
USF1P22415 AC138696.2-201ENST00000607376 223 ntBASIC12.44□□□□□ -0.42
USF1P22415 AC079336.7-201ENST00000623428 1078 ntBASIC12.44□□□□□ -0.42
USF1P22415 AC128714.1-201ENST00000637035 887 ntBASIC12.44□□□□□ -0.42
USF1P22415 NAP1L6-202ENST00000641404 1222 ntBASIC12.44□□□□□ -0.42
USF1P22415 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC12.44□□□□□ -0.42
USF1P22415 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.43□□□□□ -0.42
USF1P22415 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.43□□□□□ -0.42
USF1P22415 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 FGD5P1-202ENST00000614866 2498 ntBASIC12.43□□□□□ -0.42
USF1P22415 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.43□□□□□ -0.42
USF1P22415 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
USF1P22415 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC12.43□□□□□ -0.42
USF1P22415 AC010141.1-201ENST00000411585 623 ntBASIC12.43□□□□□ -0.42
USF1P22415 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC12.43□□□□□ -0.42
USF1P22415 AL353637.1-201ENST00000451571 732 ntBASIC12.43□□□□□ -0.42
USF1P22415 RPL18P13-201ENST00000478088 569 ntBASIC12.43□□□□□ -0.42
USF1P22415 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC12.43□□□□□ -0.42
USF1P22415 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
USF1P22415 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 AC008825.2-201ENST00000603374 718 ntBASIC12.43□□□□□ -0.42
USF1P22415 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 MIR6727-201ENST00000620702 65 ntBASIC12.43□□□□□ -0.42
USF1P22415 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 SNX1-214ENST00000625244 324 ntTSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC12.43□□□□□ -0.42
USF1P22415 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
USF1P22415 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 CICP23-201ENST00000605013 2741 ntBASIC12.43□□□□□ -0.42
USF1P22415 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
USF1P22415 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
USF1P22415 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
USF1P22415 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms