Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 FKBP4P8-201ENST00000610931 1369 ntBASIC13.61□□□□□ -0.23
COL5A1P20908 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 OR2W2P-201ENST00000406313 909 ntBASIC13.61□□□□□ -0.23
COL5A1P20908 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC13.61□□□□□ -0.23
COL5A1P20908 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC13.61□□□□□ -0.23
COL5A1P20908 RN7SL147P-201ENST00000487345 298 ntBASIC13.61□□□□□ -0.23
COL5A1P20908 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC13.61□□□□□ -0.23
COL5A1P20908 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC13.61□□□□□ -0.23
COL5A1P20908 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC13.61□□□□□ -0.23
COL5A1P20908 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 SHMT1P1-201ENST00000419974 1312 ntBASIC13.61□□□□□ -0.23
COL5A1P20908 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
COL5A1P20908 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC13.61□□□□□ -0.23
COL5A1P20908 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL5A1P20908 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.61□□□□□ -0.23
COL5A1P20908 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC13.6□□□□□ -0.23
COL5A1P20908 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 UROS-201ENST00000368774 744 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC13.6□□□□□ -0.23
COL5A1P20908 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC13.6□□□□□ -0.23
COL5A1P20908 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC13.6□□□□□ -0.23
COL5A1P20908 RN7SL128P-201ENST00000467883 305 ntBASIC13.6□□□□□ -0.23
COL5A1P20908 AC093300.1-201ENST00000510368 1201 ntBASIC13.6□□□□□ -0.23
COL5A1P20908 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC13.6□□□□□ -0.23
COL5A1P20908 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.6□□□□□ -0.23
COL5A1P20908 ESR1-214ENST00000638569 132 ntTSL 5 BASIC13.6□□□□□ -0.23
COL5A1P20908 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.6□□□□□ -0.23
COL5A1P20908 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.6□□□□□ -0.23
COL5A1P20908 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 AC215219.1-201ENST00000400706 1817 ntBASIC13.6□□□□□ -0.23
COL5A1P20908 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL5A1P20908 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL5A1P20908 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL5A1P20908 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 SSR4-202ENST00000370085 526 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL5A1P20908 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC13.6□□□□□ -0.23
COL5A1P20908 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC13.6□□□□□ -0.23
COL5A1P20908 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL5A1P20908 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 RN7SKP155-201ENST00000516031 288 ntBASIC13.6□□□□□ -0.23
COL5A1P20908 AC087203.1-201ENST00000532111 1181 ntBASIC13.6□□□□□ -0.23
COL5A1P20908 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 KNOP1P1-201ENST00000542108 989 ntBASIC13.6□□□□□ -0.23
COL5A1P20908 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC13.6□□□□□ -0.23
COL5A1P20908 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
COL5A1P20908 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL5A1P20908 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.59□□□□□ -0.23
COL5A1P20908 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
COL5A1P20908 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.59□□□□□ -0.23
COL5A1P20908 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL5A1P20908 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms