Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.74□□□□□ -0.21
LDB3O75112 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
LDB3O75112 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.74□□□□□ -0.21
LDB3O75112 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.74□□□□□ -0.21
LDB3O75112 ACTBP11-201ENST00000436287 1126 ntBASIC13.74□□□□□ -0.21
LDB3O75112 AC104306.2-201ENST00000451877 341 ntBASIC13.74□□□□□ -0.21
LDB3O75112 AC108725.1-201ENST00000495472 409 ntBASIC13.74□□□□□ -0.21
LDB3O75112 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 AC007663.3-201ENST00000609632 465 ntBASIC13.74□□□□□ -0.21
LDB3O75112 Z98259.2-201ENST00000641583 609 ntBASIC13.74□□□□□ -0.21
LDB3O75112 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 AC027601.5-201ENST00000624065 2482 ntBASIC13.74□□□□□ -0.21
LDB3O75112 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 AC018735.1-201ENST00000437208 1502 ntBASIC13.74□□□□□ -0.21
LDB3O75112 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.74□□□□□ -0.21
LDB3O75112 AC090505.1-201ENST00000430515 1834 ntBASIC13.74□□□□□ -0.21
LDB3O75112 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LDB3O75112 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.74□□□□□ -0.21
LDB3O75112 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
LDB3O75112 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 FAM86MP-201ENST00000340703 885 ntBASIC13.73□□□□□ -0.21
LDB3O75112 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 PFN1P12-201ENST00000455938 534 ntBASIC13.73□□□□□ -0.21
LDB3O75112 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.73□□□□□ -0.21
LDB3O75112 FAM8A2P-201ENST00000528813 1142 ntBASIC13.73□□□□□ -0.21
LDB3O75112 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.73□□□□□ -0.21
LDB3O75112 RBM8B-201ENST00000555532 525 ntBASIC13.73□□□□□ -0.21
LDB3O75112 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.73□□□□□ -0.21
LDB3O75112 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.73□□□□□ -0.21
LDB3O75112 MIR6074-201ENST00000612054 107 ntBASIC13.73□□□□□ -0.21
LDB3O75112 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
LDB3O75112 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LDB3O75112 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.73□□□□□ -0.21
LDB3O75112 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
LDB3O75112 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms