Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL353705.2-201ENST00000428243 662 ntBASIC14.6□□□□□ -0.07
SHOX2O60902 AC007969.1-201ENST00000433675 447 ntBASIC14.6□□□□□ -0.07
SHOX2O60902 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.6□□□□□ -0.07
SHOX2O60902 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.6□□□□□ -0.07
SHOX2O60902 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.6□□□□□ -0.07
SHOX2O60902 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
SHOX2O60902 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.6□□□□□ -0.07
SHOX2O60902 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 LINC02486-201ENST00000604157 3000 ntBASIC14.6□□□□□ -0.07
SHOX2O60902 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.6□□□□□ -0.07
SHOX2O60902 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SHOX2O60902 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC14.6□□□□□ -0.07
SHOX2O60902 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
SHOX2O60902 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 SLC1A2-208ENST00000606205 1890 ntTSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 AC026992.2-203ENST00000563004 2419 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 ADH5P3-201ENST00000433842 1137 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 AL353779.1-201ENST00000434793 351 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 SPDYE11-202ENST00000450699 704 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 TIMM8BP1-201ENST00000452384 211 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 RN7SL589P-201ENST00000481268 310 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 AC079140.1-201ENST00000508039 487 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 SPDYE9P-201ENST00000570642 692 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 LINC01115-203ENST00000606068 577 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 SPDYE10P-202ENST00000612005 668 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 SPDYE8P-202ENST00000612377 668 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 AP001002.3-201ENST00000623482 206 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 UXT-AS1-201ENST00000590504 1525 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 OS9-203ENST00000389142 2457 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 AC068580.3-201ENST00000449248 2015 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 AOC4P-203ENST00000566825 2289 ntBASIC14.59□□□□□ -0.07
SHOX2O60902 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
SHOX2O60902 LINC01024-201ENST00000499203 2769 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SHOX2O60902 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.59□□□□□ -0.07
SHOX2O60902 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.07
SHOX2O60902 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.58□□□□□ -0.07
SHOX2O60902 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.58□□□□□ -0.07
SHOX2O60902 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.58□□□□□ -0.07
SHOX2O60902 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SHOX2O60902 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.58□□□□□ -0.07
SHOX2O60902 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC14.58□□□□□ -0.08
SHOX2O60902 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms