Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1FO60840 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.91■□□□□ 0.46
CACNA1FO60840 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC17.91■□□□□ 0.46
CACNA1FO60840 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.91■□□□□ 0.46
CACNA1FO60840 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1FO60840 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1FO60840 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CACNA1FO60840 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 MYB-241ENST00000616088 3573 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1FO60840 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC17.91■□□□□ 0.46
CACNA1FO60840 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.91■□□□□ 0.46
CACNA1FO60840 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CACNA1FO60840 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 GOLGA8UP-201ENST00000527159 1755 ntBASIC17.91■□□□□ 0.46
CACNA1FO60840 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC17.91■□□□□ 0.46
CACNA1FO60840 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 AC018638.5-201ENST00000450885 754 ntBASIC17.91■□□□□ 0.46
CACNA1FO60840 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC17.91■□□□□ 0.46
CACNA1FO60840 IGHV1-12-201ENST00000518307 205 ntBASIC17.91■□□□□ 0.46
CACNA1FO60840 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC17.91■□□□□ 0.46
CACNA1FO60840 AC007326.1-201ENST00000604539 458 ntBASIC17.91■□□□□ 0.46
CACNA1FO60840 AC018635.2-201ENST00000608625 364 ntBASIC17.91■□□□□ 0.46
CACNA1FO60840 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CACNA1FO60840 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CACNA1FO60840 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 MIR33B-201ENST00000385104 96 ntBASIC17.9■□□□□ 0.46
CACNA1FO60840 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 RPL18AP8-201ENST00000486071 528 ntBASIC17.9■□□□□ 0.46
CACNA1FO60840 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 AC079328.1-201ENST00000560358 952 ntBASIC17.9■□□□□ 0.46
CACNA1FO60840 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CACNA1FO60840 PDXDC2P-206ENST00000534700 1315 ntBASIC17.9■□□□□ 0.46
CACNA1FO60840 AC074138.1-201ENST00000611182 1303 ntBASIC17.9■□□□□ 0.46
CACNA1FO60840 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC17.9■□□□□ 0.46
CACNA1FO60840 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC17.9■□□□□ 0.46
CACNA1FO60840 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC17.9■□□□□ 0.46
CACNA1FO60840 PRKXP1-201ENST00000561423 1122 ntBASIC17.9■□□□□ 0.46
CACNA1FO60840 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CACNA1FO60840 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC17.89■□□□□ 0.46
CACNA1FO60840 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.89■□□□□ 0.46
CACNA1FO60840 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.46
CACNA1FO60840 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.89■□□□□ 0.46
CACNA1FO60840 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
CACNA1FO60840 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CACNA1FO60840 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CACNA1FO60840 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.89■□□□□ 0.45
CACNA1FO60840 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 AL627231.1-201ENST00000394467 1125 ntBASIC17.89■□□□□ 0.45
CACNA1FO60840 DNAJB1P1-201ENST00000429417 1024 ntBASIC17.89■□□□□ 0.45
CACNA1FO60840 RGS5-216ENST00000449680 788 ntTSL 3 BASIC17.89■□□□□ 0.45
CACNA1FO60840 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC17.89■□□□□ 0.45
CACNA1FO60840 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC17.89■□□□□ 0.45
CACNA1FO60840 AL356740.1-201ENST00000602192 1297 ntBASIC17.89■□□□□ 0.45
CACNA1FO60840 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 GOLGA8EP-201ENST00000530246 1959 ntBASIC17.89■□□□□ 0.45
CACNA1FO60840 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.89■□□□□ 0.45
CACNA1FO60840 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CACNA1FO60840 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms