Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 FAM58BP-201ENST00000439056 645 ntBASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 CICP12-201ENST00000455801 843 ntBASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 AC027601.3-201ENST00000622907 509 ntBASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 AC244394.1-201ENST00000435000 1665 ntBASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
COL4A3BPQ9Y5P4 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 DPM3-202ENST00000368399 517 ntBASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AC004899.1-201ENST00000424687 1714 ntBASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AC005740.2-201ENST00000511085 419 ntBASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AC136759.1-202ENST00000530858 2194 ntBASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AC005324.6-201ENST00000587972 613 ntBASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AC138649.2-201ENST00000615886 705 ntBASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A3BPQ9Y5P4 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 AC215219.1-201ENST00000400706 1817 ntBASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 AC067750.1-201ENST00000608826 6545 ntBASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 KLF2P1-201ENST00000447438 1042 ntBASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 EIF4HP1-201ENST00000453115 687 ntBASIC16.31■□□□□ 0.2
COL4A3BPQ9Y5P4 AC106794.1-201ENST00000506935 792 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms