Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 GRK6P1-201ENST00000400595 1711 ntBASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP4E1Q9UPM8 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AL928921.2-201ENST00000641325 2442 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AC244394.1-201ENST00000435000 1665 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AL645933.1-201ENST00000440087 609 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 BNIP3P42-201ENST00000454982 569 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AC005586.2-201ENST00000563946 837 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 BNIP3P29-201ENST00000598302 571 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AC011447.5-201ENST00000616168 564 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 TMBIM7P-202ENST00000641474 1516 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 AC064801.2-201ENST00000625052 1303 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 CICP16-201ENST00000502609 2813 ntBASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.16■□□□□ 0.02
AP4E1Q9UPM8 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AL354877.1-201ENST00000424412 413 ntBASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AL157407.1-201ENST00000435784 904 ntBASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
AP4E1Q9UPM8 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms