Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 AC006001.1-201ENST00000325130 474 ntBASIC15.11■□□□□ 0.01
PCDH9Q9HC56 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 CTBP2P5-201ENST00000454986 1264 ntBASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 HILS1-202ENST00000545329 423 ntBASIC15.11■□□□□ 0.01
PCDH9Q9HC56 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RHOXF1P1-202ENST00000635473 501 ntBASIC15.11■□□□□ 0.01
PCDH9Q9HC56 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 MAPT-IT1-201ENST00000624111 3016 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 MIR1909-201ENST00000411312 80 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 FAM8A4P-201ENST00000435433 1213 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 PUDPP3-201ENST00000445368 636 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 AL354989.2-201ENST00000435838 1540 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 AC015818.8-201ENST00000587907 1519 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 TUBB8P4-201ENST00000511806 1324 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.1■□□□□ 0.01
PCDH9Q9HC56 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDH9Q9HC56 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDH9Q9HC56 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
PCDH9Q9HC56 AP000593.2-201ENST00000542775 1433 ntBASIC15.09■□□□□ 0.01
PCDH9Q9HC56 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms