Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL21A1Q96P44 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL21A1Q96P44 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL21A1Q96P44 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL21A1Q96P44 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.89□□□□□ -0.19
COL21A1Q96P44 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.89□□□□□ -0.19
COL21A1Q96P44 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL21A1Q96P44 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.89□□□□□ -0.19
COL21A1Q96P44 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL21A1Q96P44 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.89□□□□□ -0.19
COL21A1Q96P44 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AC112492.5-201ENST00000421897 457 ntBASIC13.88□□□□□ -0.19
COL21A1Q96P44 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 RNA5SP486-201ENST00000515961 83 ntBASIC13.88□□□□□ -0.19
COL21A1Q96P44 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AC244669.2-201ENST00000612320 853 ntBASIC13.88□□□□□ -0.19
COL21A1Q96P44 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.88□□□□□ -0.19
COL21A1Q96P44 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL21A1Q96P44 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 CICP20-201ENST00000443330 2801 ntBASIC13.87□□□□□ -0.19
COL21A1Q96P44 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.87□□□□□ -0.19
COL21A1Q96P44 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 AC079776.1-201ENST00000401540 1152 ntBASIC13.87□□□□□ -0.19
COL21A1Q96P44 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 KRT90P-201ENST00000549264 1064 ntBASIC13.87□□□□□ -0.19
COL21A1Q96P44 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 AL512343.1-201ENST00000605837 169 ntBASIC13.87□□□□□ -0.19
COL21A1Q96P44 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL21A1Q96P44 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL21A1Q96P44 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms