Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AL009178.2-201ENST00000597278 2719 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 ACE3P-201ENST00000423435 1973 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 MIR1227-201ENST00000408484 88 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 BUD31-205ENST00000456893 512 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 MIR3677-201ENST00000578964 60 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AP000845.1-201ENST00000581677 2131 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AC127024.7-201ENST00000625101 200 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AC136759.1-202ENST00000530858 2194 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 AC007292.2-201ENST00000593524 1812 ntBASIC17.1■□□□□ 0.33
TRIM47Q96LD4 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
TRIM47Q96LD4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AL512430.1-201ENST00000392575 860 ntBASIC17.09■□□□□ 0.33
TRIM47Q96LD4 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AC078875.1-201ENST00000431907 724 ntBASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AC026320.2-201ENST00000434379 478 ntBASIC17.09■□□□□ 0.33
TRIM47Q96LD4 NAGK-204ENST00000443872 878 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 RBM8B-201ENST00000555532 525 ntBASIC17.09■□□□□ 0.33
TRIM47Q96LD4 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AC005962.1-201ENST00000584100 773 ntBASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AC005357.2-202ENST00000590507 1060 ntBASIC17.09■□□□□ 0.33
TRIM47Q96LD4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 Z98259.2-201ENST00000641583 609 ntBASIC17.09■□□□□ 0.33
TRIM47Q96LD4 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC17.09■□□□□ 0.33
TRIM47Q96LD4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM47Q96LD4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM47Q96LD4 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM47Q96LD4 AL390755.1-201ENST00000623716 2027 ntBASIC17.08■□□□□ 0.33
TRIM47Q96LD4 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM47Q96LD4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.08■□□□□ 0.33
TRIM47Q96LD4 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM47Q96LD4 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRIM47Q96LD4 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM47Q96LD4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM47Q96LD4 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM47Q96LD4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM47Q96LD4 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM47Q96LD4 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRIM47Q96LD4 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms