Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 HNRNPA1P68-201ENST00000425806 979 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC10.07□□□□□ -0.8
PRKDCP78527 HNRNPA1P11-201ENST00000580106 956 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 LINC00115-201ENST00000473798 1317 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 REG3A-201ENST00000305165 718 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 C5orf38-203ENST00000457752 387 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 HNRNPA1P56-201ENST00000505767 954 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 AC104506.1-201ENST00000609247 429 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 ADK-205ENST00000539909 1866 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 STK16-202ENST00000409260 1493 ntTSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 AL137077.1-201ENST00000442115 528 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 FTH1-205ENST00000529631 507 ntTSL 4 BASIC10.07□□□□□ -0.8
PRKDCP78527 KRTAP2-2-202ENST00000542910 390 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 AL132780.2-203ENST00000555294 589 ntTSL 4 BASIC10.07□□□□□ -0.8
PRKDCP78527 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC10.07□□□□□ -0.8
PRKDCP78527 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC10.07□□□□□ -0.8
PRKDCP78527 AC008620.2-201ENST00000510294 1569 ntBASIC10.07□□□□□ -0.8
PRKDCP78527 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 MCC-208ENST00000514701 2855 ntTSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
PRKDCP78527 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
PRKDCP78527 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 CMC2-204ENST00000562713 573 ntTSL 3 BASIC10.06□□□□□ -0.8
PRKDCP78527 CMC2-209ENST00000565108 399 ntTSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 MECP2-226ENST00000640414 897 ntTSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC10.06□□□□□ -0.8
PRKDCP78527 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC10.06□□□□□ -0.8
PRKDCP78527 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 C18orf15-201ENST00000623680 2534 ntBASIC10.06□□□□□ -0.8
PRKDCP78527 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 GOSR2-231ENST00000640007 1425 ntTSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 AC096677.3-201ENST00000413162 387 ntBASIC10.06□□□□□ -0.8
PRKDCP78527 AC093627.3-201ENST00000467050 574 ntTSL 4 BASIC10.06□□□□□ -0.8
PRKDCP78527 RPL30-213ENST00000523172 274 ntTSL 5 BASIC10.06□□□□□ -0.8
PRKDCP78527 AC091691.1-201ENST00000583587 1018 ntBASIC10.06□□□□□ -0.8
PRKDCP78527 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
PRKDCP78527 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC10.06□□□□□ -0.8
PRKDCP78527 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms