Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DUX4L50-201ENST00000455245 715 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 AC063952.3-201ENST00000467756 308 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 GDNF-207ENST00000515058 764 ntTSL 5 BASIC12.75□□□□□ -0.37
COL8A1P27658 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.75□□□□□ -0.37
COL8A1P27658 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
COL8A1P27658 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.75□□□□□ -0.37
COL8A1P27658 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
COL8A1P27658 SRP14-204ENST00000558720 780 ntTSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 EMC4-208ENST00000559078 599 ntTSL 3 BASIC12.75□□□□□ -0.37
COL8A1P27658 ELP5-212ENST00000574255 671 ntTSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
COL8A1P27658 AL360270.3-201ENST00000609118 1348 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 AC133540.1-201ENST00000620845 1019 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC12.75□□□□□ -0.37
COL8A1P27658 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.75□□□□□ -0.37
COL8A1P27658 LINC01815-202ENST00000641468 1409 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 AL645728.2-202ENST00000641679 227 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.75□□□□□ -0.37
COL8A1P27658 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC12.75□□□□□ -0.37
COL8A1P27658 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 AC092850.2-201ENST00000623821 2697 ntBASIC12.75□□□□□ -0.37
COL8A1P27658 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL8A1P27658 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
COL8A1P27658 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 GUSBP10-201ENST00000417412 665 ntBASIC12.74□□□□□ -0.37
COL8A1P27658 AC108734.2-201ENST00000420887 1069 ntBASIC12.74□□□□□ -0.37
COL8A1P27658 OR51A9P-201ENST00000422578 911 ntBASIC12.74□□□□□ -0.37
COL8A1P27658 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC12.74□□□□□ -0.37
COL8A1P27658 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 HNRNPA1P42-201ENST00000458678 957 ntBASIC12.74□□□□□ -0.37
COL8A1P27658 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.74□□□□□ -0.37
COL8A1P27658 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC12.74□□□□□ -0.37
COL8A1P27658 GOLGA2P7-209ENST00000560408 745 ntBASIC12.74□□□□□ -0.37
COL8A1P27658 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
COL8A1P27658 RN7SL357P-201ENST00000581065 298 ntBASIC12.74□□□□□ -0.37
COL8A1P27658 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC12.74□□□□□ -0.37
COL8A1P27658 AL158211.2-201ENST00000607282 395 ntBASIC12.74□□□□□ -0.37
COL8A1P27658 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
COL8A1P27658 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
COL8A1P27658 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
COL8A1P27658 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 AC138969.2-201ENST00000532739 9932 ntBASIC12.73□□□□□ -0.37
COL8A1P27658 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms