Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
LIG1P18858 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG1P18858 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG1P18858 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.88■□□□□ 0.29
LIG1P18858 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG1P18858 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC16.88■□□□□ 0.29
LIG1P18858 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
LIG1P18858 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LIG1P18858 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.88■□□□□ 0.29
LIG1P18858 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 AC099521.3-201ENST00000624251 2938 ntBASIC16.87■□□□□ 0.29
LIG1P18858 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 DGCR9-201ENST00000609630 2415 ntBASIC16.87■□□□□ 0.29
LIG1P18858 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG1P18858 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 AC079776.1-201ENST00000401540 1152 ntBASIC16.87■□□□□ 0.29
LIG1P18858 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG1P18858 KRT43P-201ENST00000434019 910 ntBASIC16.87■□□□□ 0.29
LIG1P18858 ATP5G2P4-201ENST00000442175 420 ntBASIC16.87■□□□□ 0.29
LIG1P18858 AC012441.1-201ENST00000446669 685 ntBASIC16.87■□□□□ 0.29
LIG1P18858 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 ACA64.2-201ENST00000459014 129 ntBASIC16.87■□□□□ 0.29
LIG1P18858 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.87■□□□□ 0.29
LIG1P18858 KRT18P25-201ENST00000508931 1278 ntBASIC16.87■□□□□ 0.29
LIG1P18858 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG1P18858 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG1P18858 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.87■□□□□ 0.29
LIG1P18858 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIG1P18858 AL008721.1-201ENST00000609964 604 ntBASIC16.87■□□□□ 0.29
LIG1P18858 AL022328.1-201ENST00000610050 478 ntBASIC16.87■□□□□ 0.29
LIG1P18858 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.87■□□□□ 0.29
LIG1P18858 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.87■□□□□ 0.29
LIG1P18858 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 MRPL37P1-201ENST00000592451 1337 ntBASIC16.87■□□□□ 0.29
LIG1P18858 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.87■□□□□ 0.29
LIG1P18858 AC090643.2-201ENST00000623442 2029 ntBASIC16.87■□□□□ 0.29
LIG1P18858 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LIG1P18858 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 AGAP10P-201ENST00000454844 2418 ntBASIC16.87■□□□□ 0.29
LIG1P18858 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIG1P18858 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
LIG1P18858 ARSEP1-201ENST00000420443 635 ntBASIC16.86■□□□□ 0.29
LIG1P18858 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.86■□□□□ 0.29
LIG1P18858 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.86■□□□□ 0.29
LIG1P18858 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
LIG1P18858 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 AL138725.1-201ENST00000407347 1314 ntBASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms