Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
UPK1AO00322 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 FAM8A4P-201ENST00000435433 1213 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 AC078819.1-201ENST00000547454 765 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 AC012085.1-201ENST00000548270 765 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.86□□□□□ -0.19
UPK1AO00322 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.86□□□□□ -0.19
UPK1AO00322 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 OR10B1P-201ENST00000601666 907 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 AC012645.4-201ENST00000610691 1061 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.86□□□□□ -0.19
UPK1AO00322 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 AC006453.4-201ENST00000636949 1252 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC13.86□□□□□ -0.19
UPK1AO00322 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 AC011498.7-201ENST00000624986 2027 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
UPK1AO00322 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC13.86□□□□□ -0.19
UPK1AO00322 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 AC015688.4-201ENST00000580780 1647 ntBASIC13.86□□□□□ -0.19
UPK1AO00322 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
UPK1AO00322 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
UPK1AO00322 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 AC215219.1-201ENST00000400706 1817 ntBASIC13.85□□□□□ -0.19
UPK1AO00322 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
UPK1AO00322 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 KRT43P-201ENST00000434019 910 ntBASIC13.85□□□□□ -0.19
UPK1AO00322 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 ALG3P1-201ENST00000508806 1114 ntBASIC13.85□□□□□ -0.19
UPK1AO00322 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.85□□□□□ -0.19
UPK1AO00322 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.85□□□□□ -0.19
UPK1AO00322 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.85□□□□□ -0.19
UPK1AO00322 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.85□□□□□ -0.19
UPK1AO00322 AC138951.2-201ENST00000623455 1161 ntBASIC13.85□□□□□ -0.19
UPK1AO00322 AP001002.3-201ENST00000623482 206 ntBASIC13.85□□□□□ -0.19
UPK1AO00322 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.85□□□□□ -0.19
UPK1AO00322 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.85□□□□□ -0.19
UPK1AO00322 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
UPK1AO00322 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
UPK1AO00322 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms