Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
IFT140Q96RY7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
IFT140Q96RY7 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
IFT140Q96RY7 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 MIR1307-201ENST00000408840 149 ntBASIC23.22■■□□□ 1.31
IFT140Q96RY7 AC026884.1-201ENST00000418296 457 ntBASIC23.22■■□□□ 1.31
IFT140Q96RY7 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 UGT1A12P-201ENST00000447084 853 ntBASIC23.22■■□□□ 1.31
IFT140Q96RY7 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
IFT140Q96RY7 KRT18P15-201ENST00000458108 1291 ntBASIC23.22■■□□□ 1.31
IFT140Q96RY7 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
IFT140Q96RY7 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 BOLA3P2-201ENST00000586496 323 ntBASIC23.22■■□□□ 1.31
IFT140Q96RY7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
IFT140Q96RY7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC23.22■■□□□ 1.31
IFT140Q96RY7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 GSN-206ENST00000394353 2311 ntTSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 ABCD1P3-201ENST00000562927 605 ntBASIC23.21■■□□□ 1.31
IFT140Q96RY7 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 AC139100.2-201ENST00000616901 662 ntBASIC23.21■■□□□ 1.31
IFT140Q96RY7 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 USP39-220ENST00000613444 2161 ntTSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
IFT140Q96RY7 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
IFT140Q96RY7 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
IFT140Q96RY7 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
IFT140Q96RY7 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC23.2■■□□□ 1.31
IFT140Q96RY7 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
IFT140Q96RY7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 HSD3BP1-201ENST00000286193 1111 ntBASIC23.2■■□□□ 1.3
IFT140Q96RY7 THAP4-203ENST00000402545 833 ntTSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 COG6-212ENST00000630730 186 ntTSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
IFT140Q96RY7 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC23.2■■□□□ 1.3
IFT140Q96RY7 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC23.19■■□□□ 1.3
IFT140Q96RY7 AC041040.1-201ENST00000425197 460 ntBASIC23.19■■□□□ 1.3
IFT140Q96RY7 RFNG-202ENST00000429557 994 ntTSL 5 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 RN7SL69P-201ENST00000468423 272 ntBASIC23.19■■□□□ 1.3
IFT140Q96RY7 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 CCNL2P1-201ENST00000512846 969 ntBASIC23.19■■□□□ 1.3
IFT140Q96RY7 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC23.19■■□□□ 1.3
IFT140Q96RY7 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms