Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 AC006987.1-201ENST00000413610 527 ntBASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 IFNWP2-201ENST00000431203 580 ntBASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 ESR1-214ENST00000638569 132 ntTSL 5 BASIC17.46■□□□□ 0.38
CCDC88AQ3V6T2 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 AL365181.1-201ENST00000564032 1828 ntBASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 FKBP4P8-201ENST00000610931 1369 ntBASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 SNX15-201ENST00000352068 771 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 RNLS-203ENST00000437752 525 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 AC023906.1-201ENST00000486386 453 ntBASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 AC092612.1-201ENST00000514501 998 ntBASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 CICP14-201ENST00000629111 2732 ntBASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC88AQ3V6T2 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AL161932.2-201ENST00000435436 679 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 NRADDP-201ENST00000437305 691 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AC010900.1-201ENST00000449849 1296 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 GRPEL2P1-201ENST00000453145 339 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 NDUFB10P1-201ENST00000567319 521 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms