Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.64□□□□□ -0.07
SHOX2O60902 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.64□□□□□ -0.07
SHOX2O60902 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
SHOX2O60902 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
SHOX2O60902 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
SHOX2O60902 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
SHOX2O60902 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 AC003102.2-201ENST00000589195 1469 ntBASIC14.63□□□□□ -0.07
SHOX2O60902 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 ALDH1L1-205ENST00000452905 2758 ntTSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 PDIA3P1-201ENST00000471856 1510 ntBASIC14.63□□□□□ -0.07
SHOX2O60902 TGM7-201ENST00000452443 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 YBX2P1-201ENST00000394192 760 ntBASIC14.63□□□□□ -0.07
SHOX2O60902 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.63□□□□□ -0.07
SHOX2O60902 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 AC243562.1-201ENST00000560672 389 ntBASIC14.63□□□□□ -0.07
SHOX2O60902 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SHOX2O60902 DUX4L47-201ENST00000566374 394 ntBASIC14.63□□□□□ -0.07
SHOX2O60902 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.63□□□□□ -0.07
SHOX2O60902 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.63□□□□□ -0.07
SHOX2O60902 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SHOX2O60902 AC092902.6-201ENST00000641783 218 ntBASIC14.63□□□□□ -0.07
SHOX2O60902 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC14.63□□□□□ -0.07
SHOX2O60902 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
SHOX2O60902 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SHOX2O60902 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
SHOX2O60902 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 ARMCX2-202ENST00000330154 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC14.62□□□□□ -0.07
SHOX2O60902 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC14.62□□□□□ -0.07
SHOX2O60902 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.62□□□□□ -0.07
SHOX2O60902 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 AL645937.2-201ENST00000396808 931 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.62□□□□□ -0.07
SHOX2O60902 SHC1P1-201ENST00000425230 1745 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SHOX2O60902 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.62□□□□□ -0.07
SHOX2O60902 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.62□□□□□ -0.07
SHOX2O60902 KRT8P48-201ENST00000515599 1220 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SHOX2O60902 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.62□□□□□ -0.07
SHOX2O60902 AC131206.1-201ENST00000538078 1211 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.62□□□□□ -0.07
SHOX2O60902 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.62□□□□□ -0.07
SHOX2O60902 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.62□□□□□ -0.07
SHOX2O60902 AC025048.3-201ENST00000590609 569 ntBASIC14.62□□□□□ -0.07
SHOX2O60902 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms