Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
SDCBPO00560 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.53□□□□□ -0.4
SDCBPO00560 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC12.53□□□□□ -0.4
SDCBPO00560 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 AC087499.6-201ENST00000411576 835 ntBASIC12.53□□□□□ -0.4
SDCBPO00560 SOCS2P1-201ENST00000417727 557 ntBASIC12.53□□□□□ -0.4
SDCBPO00560 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 SPTLC1P1-201ENST00000447199 261 ntBASIC12.53□□□□□ -0.4
SDCBPO00560 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.53□□□□□ -0.4
SDCBPO00560 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC12.53□□□□□ -0.4
SDCBPO00560 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC12.53□□□□□ -0.4
SDCBPO00560 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.53□□□□□ -0.4
SDCBPO00560 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 INO80C-206ENST00000586489 594 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 MIR8072-201ENST00000614241 80 ntBASIC12.53□□□□□ -0.4
SDCBPO00560 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SDCBPO00560 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.53□□□□□ -0.4
SDCBPO00560 FAM90A12P-201ENST00000519497 2375 ntBASIC12.53□□□□□ -0.4
SDCBPO00560 FAM90A24P-201ENST00000520792 2369 ntBASIC12.53□□□□□ -0.4
SDCBPO00560 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.53□□□□□ -0.4
SDCBPO00560 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.53□□□□□ -0.4
SDCBPO00560 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.52□□□□□ -0.4
SDCBPO00560 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SDCBPO00560 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
SDCBPO00560 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SDCBPO00560 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.4
SDCBPO00560 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
SDCBPO00560 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC12.52□□□□□ -0.4
SDCBPO00560 AC111170.3-201ENST00000624282 2464 ntBASIC12.52□□□□□ -0.4
SDCBPO00560 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
SDCBPO00560 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SDCBPO00560 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SDCBPO00560 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
SDCBPO00560 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SDCBPO00560 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.52□□□□□ -0.4
SDCBPO00560 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
SDCBPO00560 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 AL442647.2-201ENST00000429864 857 ntBASIC12.52□□□□□ -0.41
SDCBPO00560 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC12.52□□□□□ -0.41
SDCBPO00560 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SDCBPO00560 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC12.52□□□□□ -0.41
SDCBPO00560 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC12.52□□□□□ -0.41
SDCBPO00560 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
SDCBPO00560 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.52□□□□□ -0.41
SDCBPO00560 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
SDCBPO00560 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms